AxParafit: Highly optimized and parallelized version of Parafit.
What do the Programs do?
AxParafit and AxPcoords are highly optimized versions of Pierre
programs for statistical analysis of host-parasite coevolution.
AxParafit has also been parallelized with
MPI (Message Passing Interface) for compute clusters. We have used
parallel AxParafit to carry out the largest co-evolutionary
analysis to date for the paper describing the software.
Citing AxParafit & AxPcoords: When publishing results using
AxParafit or AxPcoords please cite the following papers:
If you also used the CopyCat tool in your analyses, please cite:
Manual, Source Code (under GPL), and Binaries
Link to CopyCat version with AxParafit/AxPcoords
- 512 entries test data set (n1 = 512, n2=512, n3=503, n4=505)
- 1024 entries test data set (n1=1024, n2=1024, n3=1009, n4=1015)
Some pre-compiled Binaries:
Libraries required for compiling fast version:
Results and data from the paper: An empirical Study of Smut Fungi and their Hosts: