GapsMis

pairwise sequence alignment

About


GapsMis is a tool for pairwise sequence alignment with a bounded number of gaps.

GapsMis is a command-driven program implemented in the C programming language and developed under GNU/Linux operating system. It only requires standard C libraries and gcc compiler for compilation.

libgapmis is an ultrafast library for pairwise short-read alignment, based on GapMis, including accelerated SSE-based and GPU-based versions.

The functions made available via libgapmis can be seamlessly integrated into any short-read alignment pipeline.

System Requirements

Software:
  1. 32-bit or 64-bit Linux system


Contact

Tomas Flouri
Scientific Computing Group (Exelixis Lab & HPC Infrastructure)
Heidelberg Institute for Theoretical Studies (HITS gGmbH)
Schloss-Wolfsbrunnenweg 35
D-69118 Heidelberg
Germany

Email: Tomas.Flouri@h-its.org