GapsMis
pairwise sequence alignment
Publications
Refereed Conference Articles
- Nikolaos Alachiotis, Simon Berger, Tomas Flouri, Solon P. Pissis, and Alexandros Stamatakis.
libgapmis: an ultrafast library for short-read single-gap alignment. In Proceedings of the International Conference on Bioinformatics & Biomedicine Workshops
(BIBMW 2012), pp. 688-695, 2012. IEEE Computer Society Press
- Tomas Flouri, Costas S. Iliopoulos, Kunsoo Park, and Solon P. Pissis.
GapMis-OMP: pairwise short-read alignment on multi-core architectures. In Proceedings of the 8th Artificial Intelligence Applications and Innovations Conference (AIAI 2012), IFIP Advances in Information and Communication Technology, 2:593-601, 2012. Springer
- Tomas Flouri, Kimon Frousios, Costas S. Iliopoulos, Kunsoo Park, Solon P. Pissis, and German Tischler.
Approximate string-matching with a single gap for sequence alignment.
In Proceedings of the 2nd ACM International Conference on Bioinformatics and Computational Biology (ACM-BCB 2011), pp. 490-492, 2011.
ACM Digital Library
Refereed Journal Articles
- Nikolaos Alachiotis, Simon Berger, Tomas Flouri, Solon P. Pissis, and Alexandros Stamatakis.
libgapmis: extending short-read alignments.
BMC Bioinformatics, 2013. BioMed Central (in press)
- Tomas Flouri, Kimon Frousios, Costas S. Iliopoulos, Kunsoo Park, Solon P. Pissis, and German Tischler.
GapMis: a tool for pairwise sequence alignment with a single gap.
Recent Patents on DNA and Gene Sequence Journal: Pattern Finding in Computational Molecular Biology, 2012. Bentham Science (in press)