GapsMis is a tool for pairwise sequence alignment with a bounded number of gaps.
GapsMis is a command-driven program implemented in the C programming language and developed under GNU/Linux operating system. It only requires standard C libraries and gcc compiler for compilation.
libgapmis is an ultrafast library for pairwise short-read alignment, based on GapMis, including accelerated SSE-based and GPU-based versions.
The functions made available via libgapmis can be seamlessly integrated into any short-read alignment pipeline.
1. 32-bit or 64-bit Linux system
Solon P. Pissis
Scientific Computing Group (Exelixis Lab & HPC Infrastructure)
Heidelberg Institute for Theoretical Studies (HITS gGmbH)
Email: solon.pissis @ h-its.org